Hello again,
I have a few suggestions to you consider. I don't really know if majority would like to have these options but I still want to point out to these things.
1- Scroll Wiggling
I have a problem with the minor touches on magic mouse. The scroll is very sensitive and when working on pixel perfect, the wiggling causes always pauses my workflow.
2 - Navigation window size
I'd be very nice to see the nav window %100 size. Since it's fixed, when working on small icons (eg 64x64) it's hard to see the %100 view from nav window. Also if I could focus my navigator window to a single artboard, that'd be awesome as well.
3 - Zoom Tool Behaviour
In omnigraffle you can hold z to temporary zoom in or out. If you press once it'll switch to zoom tool. It'd be very awesome to have the same feeling with the zoom tool. Since it's a habit for me to hold z tool, the error sound keeps playing when hold the z tool. In illustrator there's no such feature but it doesn't have an error sound so it could be ignored.
Right now, these are all -besides the stroke damaging conversion-
I'll keep posting later if I happen to stumble anything :)