When I do Layer - Create compound it just acts like the Add boolean. I may just have to adjust how I draw things (or in this case trace) and start with the entire outline of everything and then do the inner shapes. As of right now I'm drawing shapes, copying, subtracting, pasting, etc. and is becoming a nightmare.
I tried looking through all the tabs and such and couldn't find a feature that acts the same as it does in Illustrator (which kind of sucks). I don't expect the programs to be the same, but this was one feature in illustrator that I loved. That and the locked layers to where you could go in outline mode and see the image still there so you could see what you were drawing off of.